Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2023-11-10 12:15:31,391 [626] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2023-11-10 12:15:31,629 [626] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2023-11-10 12:15:31,636 [626] INFO pulse.unloader: ------------------------------------------------------------------------
2023-11-10 12:15:31,637 [626] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2023-11-10 12:15:31,637 [626] INFO pulse.unloader: ------------------------------------------------------------------------
2023-11-10 12:15:31,694 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:15:31,695 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:15:31,696 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:15:31,697 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:15:31,955 [626] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2023-11-10 12:15:33,065 [626] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2023-11-10 12:15:33,109 [626] INFO pulse.unloader:
Do an intial solve
2023-11-10 12:15:33,258 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:15:33,260 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:15:33,261 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:15:33,262 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:15:33,263 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:15:33,917 [626] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-11-10 12:15:34,016 [626] DEBUG UFL_LEGACY: Blocks of each mode:
2023-11-10 12:15:34,299 [626] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-11-10 12:16:24,541 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:16:24,542 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:16:24,543 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:16:24,543 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:16:24,544 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:16:24,820 [626] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-11-10 12:16:24,924 [626] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-11-10 12:16:25,195 [626] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-11-10 12:16:29,790 [626] INFO pulse.unloader:
Iteration: 0
2023-11-10 12:16:34,760 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-11-10 12:16:34,813 [626] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-11-10 12:16:40,743 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:16:40,749 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-11-10 12:16:40,809 [626] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-11-10 12:16:41,341 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:16:41,400 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:16:41,402 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:16:41,458 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:16:41,460 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:16:41,524 [626] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2023-11-10 12:16:41,754 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:16:41,755 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:16:41,757 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:16:41,758 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:16:41,759 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:16:42,200 [626] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-11-10 12:16:42,300 [626] DEBUG UFL_LEGACY: Blocks of each mode:
2023-11-10 12:16:42,578 [626] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-11-10 12:17:32,628 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:17:32,629 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:17:32,630 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:17:32,631 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:17:32,632 [626] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-11-10 12:17:32,810 [626] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-11-10 12:17:32,910 [626] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-11-10 12:17:33,169 [626] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-11-10 12:17:37,543 [626] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2023-11-10 12:17:37,773 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:37,775 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:37,840 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:37,842 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:37,901 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:37,903 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:37,955 [626] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2023-11-10 12:17:37,971 [626] INFO pulse.unloader:
Residual: 0.011328623428538194
2023-11-10 12:17:37,972 [626] INFO pulse.unloader:
Iteration: 1
2023-11-10 12:17:38,231 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:38,233 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:38,308 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:38,309 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:38,370 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:38,372 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:38,428 [626] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2023-11-10 12:17:42,389 [626] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2023-11-10 12:17:42,621 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:42,624 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:42,682 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:42,685 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:42,744 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:42,745 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:42,798 [626] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2023-11-10 12:17:42,813 [626] INFO pulse.unloader:
Residual: 0.001698010214540216
2023-11-10 12:17:42,814 [626] INFO pulse.unloader:
Iteration: 2
2023-11-10 12:17:43,084 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:43,085 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:43,144 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:43,146 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:43,212 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:43,214 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:43,267 [626] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2023-11-10 12:17:47,165 [626] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2023-11-10 12:17:47,395 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:47,397 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:47,457 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:47,458 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:47,539 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:47,542 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:47,611 [626] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2023-11-10 12:17:47,639 [626] INFO pulse.unloader:
Residual: 0.00025928769312986966
2023-11-10 12:17:47,640 [626] INFO pulse.unloader:
Iteration: 3
2023-11-10 12:17:47,873 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:47,874 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:47,952 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:47,954 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:48,011 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:48,013 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:48,073 [626] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2023-11-10 12:17:51,951 [626] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2023-11-10 12:17:52,181 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:52,183 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:52,250 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:52,251 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:52,321 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:52,323 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:52,381 [626] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2023-11-10 12:17:52,397 [626] INFO pulse.unloader:
Residual: 3.93130429591956e-05
2023-11-10 12:17:52,398 [626] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2023-11-10 12:17:52,718 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:52,722 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:52,786 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:52,787 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:52,846 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-11-10 12:17:52,848 [626] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()